SeekGene Increases Efficiency by 500% by Leveraging MemVerge Memory Machine in the Cloud

Major Memory Computer software Enhances Information Loading and Exporting General performance by Two Orders of Magnitude Allows SeekGene to Scale Up Investigation Throughput by 5 Instances

MILPITAS, Calif., May 12, 2022 /PRNewswire/ — MemVerge™, the pioneers of Massive Memory software package, right now declared that SeekGene, a biotechnology exploration firm focusing on single-mobile know-how, has significantly minimized processing time and cost for details intensive one-cell examination tasks making use of MemVerge Memory Equipment working on AliCloud i4p compute scenarios. As a outcome, SeekGene is viewing a five-fold enhance in output for every virtual device (VM) in its analytical functions. In unique, the data loading and exporting functionality of its single cell sequencing pipeline has enhanced by two orders of magnitude, and it has doubled the sample dimensions of the dataset made use of in the analyses.

MemVerge Logo (PRNewsfoto/MemVerge)

SeekGene is looking at a five-fold improve in output for every digital machine (VM) in its analytical operations.

SeekGene is a biotechnology company focusing on single-cell technological innovation that supports scientific analysis and development of precision drugs. The professional medical biopharmaceutical corporation owns an special microporous chip and water-in-oil dual technologies system and performs unbiased analysis and enhancement of higher throughput solitary-mobile goods, experiments, and complete-chain expert services for bioinformatics investigation.

SeekGene’s SeekOne NGS solitary-cell library system, the SeekGene On the net automated on-line info assessment platform, and its proprietary droplet approach and micropore method dual system sequencing abilities supply information evaluation for worldwide scientific scientists. The sequencing expert services are deployed on AliCloud. Having said that, due to the fact analytical processes use expression details as higher as hundreds of hundreds of reads, sequencing investigation can fail on conventional VM cases owing to inadequate memory. In addition, the export and loading procedure of short-term info on disk throughout sequencing tasks can also be exceptionally prolonged.

Making use of MemVerge Memory Machine Cloud Edition application functioning on AliCloud i4p VM occasions, which element Intel Optane persistent memory (PMem), SeekGene is now capable to use massive memory methods with no alter to its code. This permits SeekGene to double its sample sizing and permits up to 5 periods additional concurrent processes to run. More, with MemVerge Memory Device Cloud Version, SeekGene is in a position to strengthen details loading and exporting effectiveness by two orders of magnitude by removing the I/O bottleneck that is triggered by disk reads and writes. Specifically:

  • On a standard VM instance which utilizes NVMe SSD to help you save temporary info, it takes in excess of 15 minutes to retailer the dataset. By employing MemVerge Memory Equipment snapshot technological innovation, conserving the details requires only 2.5 seconds.
  • When compared to AliCloud ESC.g5, the earlier AliCloud VM occasion employed by SeekGene, the AliCloud ECS.i4p, together with MemVerge Memory Equipment technological know-how, permits SeekGene to run 5 concurrent tasks, just about every with two times the measurement of the unique dataset.

“Applying MemVerge Memory Device, we are able to employ huge memory methods in the cloud with no refactoring our code, and get rid of the hold off prompted by storage I/O otherwise needed in our pipelines,” stated Xingyong Ma, Co-founder and Main Scientist of SeekGene. “As a final result, we are in a position to slash our analytical time and charges appreciably even though optimizing our single-mobile sequencing capabilities for researchers around the globe to market more quickly enhancement of precision drugs.”

“The SeekGene use scenario is a standard example of how biotechnology scientists can revolutionize their computational analyses by leveraging Big Memory technological innovation in the cloud,” claimed Jonathan Jiang, Main Operating Officer, MemVerge. “These details intensive workloads can now be done at file speeds and at dramatically decrease price. For the biotechnology sector, this can be a correct gamechanger.”

MemVerge Memory Equipment enables apps to utilize 100% of out there memory potential across various memory kinds with no code refactoring expected, although furnishing new operational abilities to memory-centric workloads. MemVerge Memory Equipment Cloud Version extends these benefits to cloud workloads, offering memory virtualization, in-memory fault-tolerance and mobility solutions that organizations can simply incorporate to their cloud infrastructure. Stateful, non-fault-tolerant, and prolonged-operating applications can now comprehend the assure of cloud agility and flexibility. A lot more information on Memory Device Cloud Version is available here. 

About MemVerge                           
MemVerge is pioneering Significant Memory Computing for a multi-cloud planet. Big gaps exist in present-day cloud infrastructure for knowledge-intensive high-overall performance purposes. MemVerge® Memory Machine™ delivers computer software-described, composable memory and intelligent memory services to bridge these gaps. As a computer software chief in the CXL ecosystem, MemVerge composable memory technology provisions, tiers, disaggregates, and pools heterogeneous memory to scale memory capacity and minimize memory price tag. MemVerge ZeroIO™ in-memory snapshot services transparently checkpoint, clone, replicate, and restore jogging apps anytime, anyplace in a multi-cloud computing atmosphere. Overall, Big Memory Computing technologies shorten time-to-effects and are providing unprecedented in-memory application availability and mobility for main enterprises, exploration establishments and cloud assistance providers. MemVerge aims to democratize data-intense compute for researchers, researchers, analysts and engineers all around the environment, and liberate all workloads to move in multi-cloud environments everywhere. To find out extra about MemVerge, stop by www.memverge.com.

Memory Machine™ and Memory Device ZeroIO™ are trademarks owned by MemVerge.

Media Contacts:
Steve Sturgeon
MemVerge
[email protected]
858.472.5669

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Frederic M. Kolodziej

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